Job Reference
428_25_LS_INB_RE1
Position
Junior Research Engineer for Biomedical Data Portals (RE1)
Closing Date
Wednesday, 02 July, 2025
Reference: 428_25_LS_INB_RE1
Job title: Junior Research Engineer for Biomedical Data Portals (RE1)
About BSC
The Barcelona Supercomputing Center - Centro Nacional de Supercomputación (BSC-CNS) is the leading supercomputing center in Spain. It houses MareNostrum, one of the most powerful supercomputers in Europe, was a founding and hosting member of the former European HPC infrastructure PRACE (Partnership for Advanced Computing in Europe), and is now hosting entity for EuroHPC JU, the Joint Undertaking that leads large-scale investments and HPC provision in Europe. The mission of BSC is to research, develop and manage information technologies in order to facilitate scientific progress. BSC combines HPC service provision and R&D into both computer and computational science (life, earth and engineering sciences) under one roof, and currently has over 1000 staff from 60 countries.
Look at the BSC experience:
BSC-CNS YouTube Channel
Let's stay connected with BSC Folks!
We are particularly interested for this role in the strengths and lived experiences of women and underrepresented groups to help us avoid perpetuating biases and oversights in science and IT research. In instances of equal merit, the incorporation of the under-represented sex will be favoured.
We promote Equity, Diversity and Inclusion, fostering an environment where each and every one of us is appreciated for who we are, regardless of our differences.
If you consider that you do not meet all the requirements, we encourage you to continue applying for the job offer. We value diversity of experiences and skills, and you could bring unique perspectives to our team.
Look at the BSC experience:
BSC-CNS YouTube Channel
Let's stay connected with BSC Folks!
We are particularly interested for this role in the strengths and lived experiences of women and underrepresented groups to help us avoid perpetuating biases and oversights in science and IT research. In instances of equal merit, the incorporation of the under-represented sex will be favoured.
We promote Equity, Diversity and Inclusion, fostering an environment where each and every one of us is appreciated for who we are, regardless of our differences.
If you consider that you do not meet all the requirements, we encourage you to continue applying for the job offer. We value diversity of experiences and skills, and you could bring unique perspectives to our team.
Context And Mission
The Machine Learning for Biomedical Research Unit, led by Dr. Davide Cirillo, and the Technologies for Biomedical Research Lab, led by Dr. Salvador Capella Gutierrez, are looking for a Junior Research Engineer to contribute to the development of an online biomedical portal for the SEED-ALS project (PMPER24/00017). SEED-ALS is a national initiative at collecting, integrating, and analyzing multi-omics data related to Amyotrophic Lateral Sclerosis (ALS) to support advanced research and data sharing.
The successful candidate will be responsible for designing and implementing a web-based portal that will:
1- Display and browse information related to the datasets from the SEED-ALS consortium and existing resources in the European Genome-Phenome Archive (EGA).
2- Enable interactive visualization and navigation of analysis results and predictive models developed within the project.
3- Facilitate access to the EGA infrastructure for dataset submission and controlled-access data download by researchers.
This role offers the opportunity to work at the intersection of biomedical data science, web development, and high-performance computing, in collaboration with national and international experts in ALS research
The successful candidate will be responsible for designing and implementing a web-based portal that will:
1- Display and browse information related to the datasets from the SEED-ALS consortium and existing resources in the European Genome-Phenome Archive (EGA).
2- Enable interactive visualization and navigation of analysis results and predictive models developed within the project.
3- Facilitate access to the EGA infrastructure for dataset submission and controlled-access data download by researchers.
This role offers the opportunity to work at the intersection of biomedical data science, web development, and high-performance computing, in collaboration with national and international experts in ALS research
Key Duties
- Develop the SEED-ALS data portal, including front-end and back-end components.
- Integrate data access and query functionalities with the EGA.
- Implement data visualization tools for summary statistics and machine learning model results.
- Ensure portal usability, scalability, and security following best practices.
- Collaborate with multidisciplinary teams, including bioinformaticians, data scientists, and software engineers.
- Contribute to technical documentation and, where applicable, scientific dissemination.
Requirements
- Education
- Bachelor's or Master’s degree in Computer Science, Bioinformatics, Software Engineering, or a related field.
- Or higher education (FPII).
- Essential Knowledge and Professional Experience
- Proficiency in modern web development frameworks (e.g., React, Angular,).
- Experience with back-end development (e.g., Node.js, Django, Flask).
- Familiarity with REST APIs and database technologies (SQL and/or NoSQL).
- Strong programming skills in Python and/or JavaScript.
- Basic understanding of data formats commonly used in bioinformatics (e.g., VCF, FASTQ, BAM).
- Ability to work collaboratively in a multidisciplinary research environment.
- Additional Knowledge and Professional Experience
- Experience with data visualization libraries (e.g., D3.js, Plotly).
- Knowledge of biomedical data repositories, especially EGA.
- Interest or background in ALS or multi-omics data.
- Experience with Docker, Git, and CI/CD pipelines.
- Competences
- Good communication and presentation skills.
- Ability to work both independently and within a team.
- Excellent problem-solving and analytical skills.
Conditions
- The position will be located at BSC within the Life Sciences Department
- We offer a full-time contract (37.5h/week), a good working environment, a highly stimulating environment with state-of-the-art infrastructure, flexible working hours, extensive training plan, restaurant tickets, private health insurance, support to the relocation procedures
- Duration: Temporary - 12 months
- Holidays: 23 paid vacation days plus 24th and 31st of December per our collective agreement
- Salary: we offer a competitive salary commensurate with the qualifications and experience of the candidate and according to the cost of living in Barcelona
- Starting date: 16/07/2025
Applications procedure and process
All applications must be submitted via the BSC website and contain:
The selection will be carried out through a competitive examination system ("Concurso-Oposición"). The recruitment process consists of two phases:
- A full CV in English including contact details
- A cover/motivation letter with a statement of interest in English, clearly specifying for which specific area and topics the applicant wishes to be considered. Additionally, two references for further contacts must be included. Applications without this document will not be considered.
Development of the recruitment process
The selection will be carried out through a competitive examination system ("Concurso-Oposición"). The recruitment process consists of two phases:
- Curriculum Analysis: Evaluation of previous experience and/or scientific history, degree, training, and other professional information relevant to the position. - 40 points
- Interview phase: The highest-rated candidates at the curriculum level will be invited to the interview phase, conducted by the corresponding department and Human Resources. In this phase, technical competencies, knowledge, skills, and professional experience related to the position, as well as the required personal competencies, will be evaluated. - 60 points. A minimum of 30 points out of 60 must be obtained to be eligible for the position.
The recruitment panel will be composed of at least three people, ensuring at least 25% representation of women.
In accordance with OTM-R principles, a gender-balanced recruitment panel is formed for each vacancy at the beginning of the process. After reviewing the content of the applications, the panel will begin the interviews, with at least one technical and one administrative interview. At a minimum, a personality questionnaire as well as a technical exercise will be conducted during the process.
The panel will make a final decision, and all individuals who participated in the interview phase will receive feedback with details on the acceptance or rejection of their profile.
At BSC, we seek continuous improvement in our recruitment processes. For any suggestions or comments/complaints about our recruitment processes, please contact recruitment [at] bsc [dot] es.
For more information, please follow this link.
Deadline
The vacancy will remain open until a suitable candidate has been hired. Applications will be regularly reviewed and potential candidates will be contacted.
OTM-R principles for selection processes
BSC-CNS is committed to the principles of the Code of Conduct for the Recruitment of Researchers of the European Commission and the Open, Transparent and Merit-based Recruitment principles (OTM-R). This is applied for any potential candidate in all our processes, for example by creating gender-balanced recruitment panels and recognizing career breaks etc.
BSC-CNS is an equal opportunity employer committed to diversity and inclusion. We are pleased to consider all qualified applicants for employment without regard to race, color, religion, sex, sexual orientation, gender identity, national origin, age, disability or any other basis protected by applicable state or local law.
For more information follow this link
BSC-CNS is an equal opportunity employer committed to diversity and inclusion. We are pleased to consider all qualified applicants for employment without regard to race, color, religion, sex, sexual orientation, gender identity, national origin, age, disability or any other basis protected by applicable state or local law.
For more information follow this link